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遺伝子比較解析による珪藻類特異的なSET ドメインタンパク質ファミリーの同定
Title Alternative A comparative gene analysis reveals a diatom-specific SET domain protein family
FullText URL srfa_110_001_006.pdf
Author Nemoto, Michiko|
Abstract 　The silica cell walls of diatoms, which exhibit species-spe-cific micro- and nano- patterned structures are promising candidates for applications in nanotechnology. Previous studies revealed a number of silica cell wall-associated proteins involved in silica formation. However, molecular biological analyses toward understanding of diatom cell wall formation have been mostly limited to model diatom species and general silica formation process in diatoms is still incompletely understood. In this study, to gain a compre-hensive insight into diatom silica biomineralization, tran-scriptome data of three diatom species, Nitzschia palea, Achnanthes kuwaitensis and Pseudoleyanella lunata, were newly developed. The reads obtained from RNA sequencing were assembled into 31,946, 60,767 and 38,314 unique transcripts for N. palea, A. kuwaitensis and P. lunata, respectively. In order to identify the diatom-specific genes, three transcriptome data sets developed in this study and the protein-coding gene sets of five genome-sequenced diatoms were compared. The proteins shared only by eight diatom species that are predicted to possess an endoplasmic reticulum (ER)-targeting signal peptide were selected for further analyses. These include proteins showing homology to silicanin-1, a recently reported diatom-specific protein involved in silica formation, as well as a number of SET domain proteins. The SET domain proteins might be novel diatom-specific family of methyltransferases that may reg-ulate the function of silica formation related proteins or long chain polyamines. The genes encoding the diatom-specific SET domain proteins identified in this study, which were shown to respond to silicon were suggested to be implicated in silica biomineralization.
Keywords Biomineralization Diatom Silica Protein
Publication Title Scientific Reports of the Faculty of Agriculture, Okayama University
Published Date 2021-02-01
Volume volume110
Start Page 1
End Page 6
ISSN 2186-7755
language Japanese
File Version publisher
NAID 120006955817
目次
FullText URL srfa_110_contents.pdf
Publication Title Scientific Reports of the Faculty of Agriculture, Okayama University
Published Date 2021-02-01
Volume volume110
ISSN 2186-7755
language Japanese
File Version publisher
表紙
FullText URL srfa_110_cover.pdf
Publication Title Scientific Reports of the Faculty of Agriculture, Okayama University
Published Date 2021-02-01
Volume volume110
ISSN 2186-7755
language Japanese
File Version publisher
On the Occurrence of Clathrate Hydrates in Extreme Conditions: Dissociation Pressures and Occupancies at Cryogenic Temperatures with Application to Planetary Systems
FullText URL fulltext.pdf
Author Tanaka, Hideki| Yagasaki, Takuma| Matsumoto, Masakazu|
Published Date 2020-12-17
Publication Title The Planetary Science Journal
Volume volume1
Issue issue3
Publisher IOP Publishing
Start Page 80
ISSN 2632-3338
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2020. The Author(s).
File Version publisher
DOI 10.3847/PSJ/abc3c0
Related Url isVersionOf https://doi.org/10.3847/PSJ/abc3c0
Adsorption enhancement of nitrogen gas by atomically heterogeneous nanospace of boron nitride
FullText URL fulltext.pdf
Author Kimura, Jun| Ohkubo, Takahiro| Nishina, Yuta| Urita, Koki| Kuroda, Yasushige|
Published Date 2021-01-04
Publication Title RSC Advances
Volume volume11
Issue issue2
Publisher Royal Society of Chemistry
Start Page 838
End Page 846
ISSN 2046-2069
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
File Version publisher
DOI 10.1039/D0RA08437A
Web of Science KeyUT 000607364700023
Related Url isVersionOf https://doi.org/10.1039/D0RA08437A
Amplitude of circadian rhythms becomes weaken in the north, but there is no cline in the period of rhythm in a beetle
FullText URL fulltext.pdf
Author Abe, Masato S.| Matsumura, Kentarou| Yoshii, Taishi| Miyatake, Takahisa|
Published Date 2021-01-14
Publication Title PLoS ONE
Volume volume16
Issue issue1
Publisher Public Library of Science
Start Page e0245115
ISSN 1932-6203
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2021 Abe et al.
File Version publisher
DOI 10.1371/journal.pone.0245115
Related Url isVersionOf https://doi.org/10.1371/journal.pone.0245115
Internalization of AMPA-type Glutamate Receptor in the MIN6 Pancreatic β-cell Line
FullText URL fulltext.pdf
Author La, The Mon| Yamada, Hiroshi| Seiriki, Sayaka| Li, Shun-AI| Fujise, Kenshiro| Katsumi, Natsuho| Abe, Tadashi| Watanabe, Masami| Takei, Kohji|
Keywords endocytosis GluR2 AMPA cortactin MIN6
Published Date 2020
Publication Title Cell Structure and Function
Volume volume45
Issue issue2
Publisher Japan Society for Cell Biology
Start Page 121
End Page 130
ISSN 0386-7196
NCID AA0060007X
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2020 The Author(s)
File Version publisher
PubMed ID 32581155
DOI 10.1247/csf.20020
Web of Science KeyUT 000587739500003
Related Url isVersionOf https://doi.org/10.1247/csf.20020
Outcomes of Patients with Pulmonary Atresia with Intact Ventricular Septum Reaching Adulthood
FullText URL fulltext.pdf
Author Toh, Norihisa| Kotani, Yasuhiro| Akagi, Teiji| Kuroko, Yosuke| Baba, Kenji| Otsuki, Shin-ichi| Kasahara, Shingo| Ito, Hiroshi|
Keywords Pulmonary atresia with intact ventricular septum adult congenital heart disease outcome
Published Date 2020-06-17
Publication Title Congenital Heart Disease
Volume volume15
Issue issue1
Publisher Wiley
Start Page 1
End Page 11
ISSN 1747-079X
NCID AA12157082
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
File Version publisher
DOI 10.32604/CHD.2020.011579
Web of Science KeyUT 000564363500001
Related Url isVersionOf https://doi.org/10.32604/CHD.2020.011579
Anomalous Hall effect triggered by pressure-induced magnetic phase transition in α-Mn
FullText URL fulltext.pdf
Author Akiba, Kazuto| Iwamoto, Kaisei| Sato, Takaaki| Araki, Shingo| Kobayashi, Tatsuo C.|
Published Date 2020-10-16
Publication Title Physical Review Research
Volume volume2
Issue issue4
Publisher American Physical Society
Start Page 043090
ISSN 2643-1564
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © Authors.
File Version publisher
DOI 10.1103/PhysRevResearch.2.043090
Web of Science KeyUT 000605396700005
Related Url isVersionOf https://doi.org/10.1103/PhysRevResearch.2.043090
Enhancement of Zinc Ion Removal from Water by Physically Mixed Particles of Iron/Iron Sulfide
FullText URL fulltext.pdf
Author Kamba, Yuya| Ueta, Miharu| Uddin, Md. Azhar| Kato, Yoshiei|
Keywords Zero-valent iron Iron sulfide Zinc ion Zinc removal Groundwater treatment
Note This is a post-peer-review, pre-copyedit version of an article published in Water, Air, & Soil Pollution. The final authenticated version is available online at: http://dx.doi.org/10.1007/s11270-020-04966-4.|
Published Date 2021-01-06
Publication Title Water, Air, & Soil Pollution
Volume volume232
Issue issue1
Publisher Springer
Start Page 17
ISSN 0049-6979
NCID AA00886303
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
File Version author
DOI 10.1007/s11270-020-04966-4
Web of Science KeyUT 000605620600001
Related Url isVersionOf https://doi.org/10.1007/s11270-020-04966-4
Lokiarchaeota archaeon schizorhodopsin-2 (LaSzR2) is an inward proton pump displaying a characteristic feature of acid-induced spectral blue-shift
FullText URL fulltext.pdf
Author Kojima, Keiichi| Yoshizawa, Susumu| Hasegawa, Masumi| Nakama, Masaki| Kurihara, Marie| Kikukawa, Takashi| Sudo, Yuki|
Published Date 2020-11-30
Publication Title Scientific Reports
Volume volume10
Issue issue1
Publisher Nature Research
Start Page 20857
ISSN 2045-2322
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © The Author(s) 2020
File Version publisher
PubMed ID 33257762
DOI 10.1038/s41598-020-77936-9
Web of Science KeyUT 000609202800018
Related Url isVersionOf https://doi.org/10.1038/s41598-020-77936-9
Radiographic and clinical assessment of unidirectional porous hydroxyapatite to treat benign bone tumors
FullText URL fulltext.pdf
Author Kunisada, Toshiyuki| Hasei, Joe| Fujiwara, Tomohiro| Nakata, Eiji| Yokoo, Suguru| Demiya, Koji| Ozaki, Toshifumi|
Published Date 2020-12-09
Publication Title Scientific Reports
Volume volume10
Issue issue1
Publisher Nature Research
Start Page 21578
ISSN 2045-2322
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © The Author(s) 2020
File Version publisher
PubMed ID 33299043
DOI 10.1038/s41598-020-78409-9
Web of Science KeyUT 000608956800002
Related Url isVersionOf https://doi.org/10.1038/s41598-020-78409-9
A novel difficulty grading system for laparoscopic living donor nephrectomy
FullText URL fulltext.pdf
Author Takagi, Kosei | Kimenai, Hendrikus J. A. N.| Terkivatan, Turkan| Tran, Khe T. C.| Ijzermans, Jan N. M.| Minnee, Robert C.|
Keywords Kidney transplantation Living donors Nephrectomy Laparoscopy Hand-assisted laparoscopy Learning curve Education Teaching
Published Date 2020-06-15
Publication Title Surgical Endoscopy
Publisher Springer
ISSN 0930-2794
NCID AA10750363
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © The authors.
File Version publisher
PubMed ID 32556762
DOI 10.1007/s00464-020-07727-w
Web of Science KeyUT 000540992500014
Related Url isVersionOf https://doi.org/10.1007/s00464-020-07727-w
Observer agreement for the diagnosis of intestinal acute graft‑vs.‑host disease based on the presence of villous atrophy in the terminal ileum
FullText URL fulltext.pdf
Author Sugihara, Yuusaku| Hiraoka, Sakiko| Yasutomi, Eriko| Oka, Shohei| Yamasaki, Yasushi| Inokuchi, Toshihiro| Kinugasa, Hideaki| Takahara, Masahiro| Morito, Yuki| Takahashi, Sakuma| Harada, Keita| Tanaka, Takehiro| Otsuka, Fumio| Okada, Hiroyuki|
Keywords graft-vs.-host disease terminal ileum allo-hematopoietic stem cell transplantation villous atrophy endoscopy
Published Date 2020-02-21
Publication Title Experimental and Therapeutic Medicine
Volume volume19
Issue issue4
Publisher Spandidos Publications
Start Page 3076
End Page 3080
ISSN 1792-0981
NCID AA12610820
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © Sugiharaet al.
File Version publisher
PubMed ID 32256795
DOI 10.3892/etm.2020.8538
Web of Science KeyUT 000523637100082
Related Url isVersionOf https://doi.org/10.3892/etm.2020.8538
Incidence and related factors of hypoxia associated with elderly femoral neck fractures in the emergency department setting
FullText URL fulltext.pdf
Author Hongo, Takashi| Naito, Hiromichi| Fujiwara, Toshifumi| Inaba, Mototaka| Fujisaki, Noritomo| Nakao, Atsunori|
Keywords D-dimer geriatric hypoxia injury TRPG
Published Date 2020-12-20
Publication Title Acute Medicine and Surgery
Volume volume7
Issue issue1
Publisher Wiley
Start Page e618
ISSN 2052-8817
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2020 The Authors.
File Version publisher
PubMed ID 33364038
DOI 10.1002/ams2.618
Web of Science KeyUT 000605655900018
Related Url isVersionOf https://doi.org/10.1002/ams2.618
Altered N-glycan composition impacts flagella-mediated adhesion in Chlamydomonas reinhardtii
FullText URL fulltext.pdf
Author Xu, Nannan| Oltmanns, Anne| Zhao, Longsheng| Girot, Antoine| Karimi, Marzieh| Hoepfner, Lara| Kelterborn, Simon| Scholz, Martin| Beissel, Julia| Hegemann, Peter| Baeumchen, Oliver| Liu, Lu-Ning| Huang, Kaiyao| Hippler, Michael|
Published Date 2020-12-10
Publication Title eLife
Volume volume9
Publisher eLife Sciences Publications
Start Page e58805
ISSN 2050-084X
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2020, Xu et al.
File Version publisher
PubMed ID 33300874
DOI 10.7554/eLife.58805
Web of Science KeyUT 000603367300001
Related Url isVersionOf https://doi.org/10.7554/eLife.58805
Tryptophan and Kynurenine Enhances the Stemness and Osteogenic Differentiation of Bone Marrow-Derived Mesenchymal Stromal Cells In Vitro and In Vivo
FullText URL fulltext.pdf
Author Pham, Hai Thanh| Ono, Mitsuaki| Hara, Emilio Satoshi| Nguyen, Ha Thi Thu| Dang, Anh Tuan| Do, Hang Thuy| Komori, Taishi| Tosa, Ikue| Hazehara-Kunitomo, Yuri| Yoshioka, Yuya| Oida, Yasutaka| Akiyama, Kentaro| Kuboki, Takuo|
Keywords amino acid mesenchymal stromal cells stemness tryptophan kynurenine osteogenesis adipogenesis screening injury/fracture healing anabolics
Published Date 2021-01-04
Publication Title Materials
Volume volume14
Issue issue1
Publisher MDPI
Start Page 208
ISSN 1996-1944
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2021 by the authors.
File Version publisher
PubMed ID 33406724
DOI 10.3390/ma14010208
Web of Science KeyUT 000606251400001
Related Url isVersionOf https://doi.org/10.3390/ma14010208
Photoinduced Endosomal Escape Mechanism: A View from Photochemical Internalization Mediated by CPP-Photosensitizer Conjugates
FullText URL fulltext.pdf
Author Soe, Tet Htut| Watanabe, Kazunori| Ohtsuki, Takashi|
Keywords photochemical internalization photosensitizer cell-penetrating peptide endosome membrane
Published Date 2020-12-23
Publication Title Molecules
Volume volume26
Issue issue1
Publisher MDPI
Start Page 36
ISSN 1420-3049
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2020 by the authors.
File Version publisher
PubMed ID 33374732
DOI 10.3390/molecules26010036
Web of Science KeyUT 000606148000001
Related Url isVersionOf https://doi.org/10.3390/molecules26010036
Long-Term Improvement in Precautions for Flood Risk Mitigation: A Case Study in the Low-Lying Area of Central Vietnam
FullText URL fulltext.pdf
Author Nguyen, Cong Dinh| Ubukata, Fumikazu| Nguyen, Quang Tan| Vo, Hoang Ha|
Keywords Central Vietnam Flood risk mitigation Long-term improvement Natural hazards Precautionary measures
Published Date 2021-01-07
Publication Title International Journal of Disaster Risk Science
Volume volume12
Issue issue2
Publisher Springer
Start Page 250
End Page 266
ISSN 2095-0055
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © The Author(s) 2021
File Version publisher
DOI 10.1007/s13753-020-00326-2
Web of Science KeyUT 000605849400001
Related Url isVersionOf https://doi.org/10.1007/s13753-020-00326-2
MicroRNAs as Biomarkers for Nephrotic Syndrome
FullText URL fulltext.pdf
Author Tsuji, Kenji| Kitamura, Shinji| Wada, Jun|
Keywords microRNA nephrotic syndrome biomarker minimal change nephrotic syndrome focal segmental glomerulosclerosis membranous glomerulonephropathy
Published Date 2020-12-23
Publication Title International Journal of Molecular Sciences
Volume volume22
Issue issue1
Publisher MDPI
Start Page 88
ISSN 1422-0067
NCID AA12038549
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2020 by the authors.
File Version publisher
PubMed ID 33374848
DOI 10.3390/ijms22010088
Web of Science KeyUT 000606180900001
Related Url isVersionOf https://doi.org/10.3390/ijms22010088
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