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ゲノム進化が紐解く植物の性決定
Title Alternative Sexuality in plants, unveiled from genome evolution
FullText URL srfa_109_037_040.pdf
Author Akagi, Takashi|
Abstract Sexual polymorphism, a main strategy to maintain genetic diversity within a species, has long been a major focus in biology. Notwithstanding, in plants, evolution of sexual systems and mechanisms underlying these transitions have been little unveiled. We have elucidated the molecular mechanism of sex determination in persimmons (Diospyros spp.), where the Y-encoded smRNA gene OGI can repress the female-determining gene MeGI, and also in kiwifruits (Actinidia spp.), where the Y-encoded two sex determinants, Shy Girl and Friendly Boy, control gynoecium and androecium development, respectively. Although the molecular functions of these determinants are distinct, they have common evolutionary scenarios involving transitions of sexual systems. In persimmon, a recent genome triplication (hexaploidization) in cultivated persimmon (D. kaki) derived “flexible” sexuality via establishing epigenetic layers on the two sex determinants. On the other hand, an ancient Diospyros-specific paleo-genome duplication (paleo-tetraploidization) enabled neofunctionalization in the proto-MeGI, via positive selection, to establish a new function as a sex determinant. In kiwifruit, one of the two sex determinants, Shy Girl, was derived from neofunctionalization via Actinidia-specific duplication event. These findings exemplify how plant-specific numerous duplication events can drive flexible genetic material whose variation can be selected for development of new sexual systems.
Keywords Sex determination Sex chromosome Polyploidization Genome evolution Tree crops
Publication Title Scientific Reports of the Faculty of Agriculture, Okayama University
Published Date 2020-02-01
Volume volume109
Start Page 37
End Page 40
ISSN 2186-7755
language Japanese
File Version publisher
ICTV Virus Taxonomy Profile: Megabirnaviridae
FullText URL JGV100_9_1269.pdf
Author Sato, Yukiyo| Miyazaki, Naoyuki| Kanematsu, Satoko| Xie, Jiatao| Ghabrial, Said A.| Hillman, Bradley I.| Suzuki, Nobuhiro|
Keywords ICTV Report Megabirnaviridae taxonomy
Published Date 2019-09-01
Publication Title Journal of General Virology
Volume volume100
Issue issue9
Publisher Microbiology Society
Start Page 1269
End Page 1270
ISSN 0022-1317
NCID AA00698722
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
File Version author
PubMed ID 31418675
DOI 10.1099/jgv.0.001297
Web of Science KeyUT 000484368500002
Related Url isVersionOf https://doi.org/10.1099/jgv.0.001297
Regulation of Cathepsin E gene expression by the transcription factor Kaiso in MRL/lpr mice derived CD4+T cells
FullText URL SR9_1_3054.pdf
Author Hiramatsu, Sumie| Watanabe, Katsue S.| Zeggar, Sonia| Asano, Yosuke| Miyawaki, Yoshia| Yamamura, Yuriko| Katsuyama, Eri| Katsuyama, Takayuki| Watanabe, Haruki| Takano-Narazaki, Mariko| Matsumoto, Yoshinori| Kawabata, Tomoko| Sada, Ken-Ei| Wada, Jun|
Published Date 2019-2-28
Publication Title Scientific Reports
Volume volume9
Publisher Nature Publishing Group
Start Page 3054
ISSN 2045-2322
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © The Author(s) 2019
File Version publisher
PubMed ID 30816218
DOI 10.1038/s41598-019-38809-y
Web of Science KeyUT 000459891700064
Related Url isVersionOf https://doi.org/10.1038/s41598-019-38809-y
Yeast screening system reveals the inhibitory mechanism of cancer cell proliferation by benzyl isothiocyanate through down-regulation of Mis12
FullText URL SR9_1_8866.pdf
Author Abe-Kanoh, Naomi| Kunisue, Narumi| Myojin, Takumi| Chino, Ayako| Munemasa, Shintaro| Murata, Yoshiyuki| Satoh, Ayano| Moriya, Hisao| Nakamura, Yoshimasa|
Published Date 2019-6-20
Publication Title Scientific Reports
Volume volume9
Publisher Nature Publishing Group
Start Page 8866
ISSN 2045-2322
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © The Author(s) 2019
File Version publisher
PubMed ID 31222108
DOI 10.1038/s41598-019-45248-2
Web of Science KeyUT 000472136900040
Related Url isVersionOf https://doi.org/10.1038/s41598-019-45248-2
Comprehensive analysis of resistance-nodulation-cell division superfamily (RND) efflux pumps from Serratia marcescens, Db10
FullText URL SR9_1_4854.pdf
Author Toba, Shinsuke| Minato, Yusuke| Kondo, Yuma| Hoshikawa, Kanami| Minagawa, Shu| Komaki, Shiho| Kumagai, Takanori| Matoba, Yasuyuki| Morita, Daichi| Ogawa, Wakano| Gotoh, Naomasa| Tsuchiya, Tomofusa| Kuroda, Teruo|
Published Date 2019-3-19
Publication Title Scientific Reports
Volume volume9
Publisher Nature Publishing Group
Start Page 4854
ISSN 2045-2322
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © The Author(s) 2019
File Version publisher
PubMed ID 30890721
DOI 10.1038/s41598-019-41237-7
Web of Science KeyUT 000461563200014
Related Url isVersionOf https://doi.org/10.1038/s41598-019-41237-7
Collagen adhesion gene is associated with blood stream infections caused by methicillin-resistant Staphylococcus aureus
FullText URL fulltext.pdf
Author Iwata, Yasunori| Satou, Kenji| Furuichi, Kengo| Yoneda, Ikuko| Matsumura, Takuhiro| Yutani, Masahiro| Fujinaga, Yukako| Hase, Atsushi| Morita, Hidetoshi| Ohta, Toshiko| Senda, Yasuko| Sakai-Takemori, Yukiko| Wada, Taizo| Fujita, Shinichi| Miyake, Taito| Yasuda, Haruka| Sakai, Norihiko| Kitajima, Shinji| Toyama, Tadashi| Shinozaki, Yasuyuki| Sagara, Akihiro| Miyagawa, Taro| Hara, Akinori| Shimizu, Miho| Kamikawa, Yasutaka| Ikeo, Kazuho| Shichino, Shigeyuki| Ueha, Satoshi| Nakajima, Takuya| Matsushima, Kouji| Kaneko, Shuichi| Wada, Takashi|
Keywords Bloodstream infection Cna MRSA Whole genome sequencing
Published Date 2019-11-15
Publication Title International Journal of Infectious Diseases
Volume volume91
Publisher Elsevier
Start Page 22
End Page 31
ISSN 12019712
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2019 The Author(s). Published by Elsevier Ltd on behalf of International Society for Infectious Diseases.
File Version publisher
PubMed ID 31740408
DOI 10.1016/j.ijid.2019.11.003
Web of Science KeyUT 000510867100004
Related Url isVersionOf https://doi.org/10.1016/j.ijid.2019.11.003
Detection and analysis of non-retroviral RNA virus-like elements in plant, fungal, and insect genomes.
FullText URL MMB_1236_73.pdf
Author Kondo, Hideki| Chiba, Sotaro| Suzuki, Nobuhiro|
Keywords Pareovirology Molecular fossil record Non-retrovirus-like sequence Database search Whole-genome shotgun Genomic PCR Southern blotting Phylogenetic analysis Maximum-likelihood
Note Methods in Molecular Biology v.1236|
Published Date 2014-09-16
Publication Title Plant Virology Protocols
Publisher Humana Press
Start Page 73
End Page 88
NCID BB17407557
Content Type Book
File Version author
PubMed ID 25287497
DOI 10.1007/978-1-4939-1743-3_7
Related Url isVersionOf https://doi.org/10.1007/978-1-4939-1743-3_7
Biological and genetic diversity of plasmodiophorid-transmitted viruses and their vectors
FullText URL JGPP_79_5_307.pdf
Author Tamada, Tetsuo| Kondo, Hideki|
Keywords Soil-borne viruses Benyvirus Furovirus Pecluvirus Pomovirus Bymovirus Vector transmission Plasmodiophorids Polymyxa Spongospora
Published Date 2013-05-28
Publication Title Journal of General Plant Pathology
Volume volume79
Issue issue5
Publisher Springer
Start Page 307
End Page 320
ISSN 1345-2630
NCID AA11449093
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
File Version author
DOI 10.1007/s10327-013-0457-3
Web of Science KeyUT 000323517200003
Related Url isVersionOf https://doi.org/10.1007/s10327-013-0457-3
Complete genome sequence of Habenaria mosaic virus, a new potyvirus infecting a terrestrial orchid (Habenaria radiata) in Japan
FullText URL ArchVirol_159_1_163.pdf
Author Kondo, Hideki| Maeda, Takanori| I Wayan Gara| Chiba, Sotaro| Maruyama, Kazuyuki| Tamada, Tetsuo| Suzuki, Nobuhiro|
Published Date 2013-07-16
Publication Title Archives of Virology
Volume volume159
Issue issue1
Publisher Springer
Start Page 163
End Page 166
ISSN 0304-8608
NCID AA00548901
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
File Version author
PubMed ID 23857506
DOI 10.1007/s00705-013-1784-6
Web of Science KeyUT 000330584800017
Related Url isVersionOf https://doi.org/10.1007/s00705-013-1784-6
Cymbidium chlorotic mosaic virus, a new sobemovirus isolated from a spring orchid (Cymbidium goeringii) in Japan.
FullText URL Arch_Virol_160_8_2099.pdf
Author Kondo, Hideki| Takemoto, Shogo| Maruyama, Kazuyuki| Chiba, Sotaro| Ida Bagus Andika| Suzuki, Nobuhiro|
Published Date 2015-05-31
Publication Title Archives of Virology
Volume volume160
Issue issue8
Publisher Springer
Start Page 2099
End Page 104
ISSN 0304-8608
NCID AA00548901
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
File Version author
PubMed ID 26025156
DOI 10.1007/s00705-015-2460-9
Web of Science KeyUT 000359434000026
Related Url isVersionOf https://doi.org/10.1007/s00705-015-2460-9
Development of Genome-Wide SNP Markers for Barley via Reference- Based RNA-Seq Analysis
FullText URL FrontPlantSci_10_577.pdf
Author Tanaka, Tsuyoshi| Ishikawa, Goro| Ogiso-Tanaka, Eri| Yanagisawa, Takashi| Sato, Kazuhiro|
Keywords Japanese barley breeding RNA-Seq amplicon sequencing barley; genotyping barley genotyping
Published Date 2019-05-10
Publication Title Frontiers in plant science.
Volume volume577
Publisher Frontiers Research Foundation
Start Page 577
ISSN 1664-462X
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders Copyright © 2019 Tanaka, Ishikawa, Ogiso-Tanaka, Yanagisawa and Sato.
File Version publisher
PubMed ID 31134117
DOI 10.3389/fpls.2019.00577
Related Url isVersionOf https://doi.org/10.3389/fpls.2019.00577
Genome-Edited Triple-Recessive Mutation AltersSeed Dormancy in Wheat
FullText URL CellRep_28_5_1362.pdf
Author Abe, Fumitaka| Haque, Emdadul| Hisano, Hiroshi| Tanaka, Tsuyoshi| Kamiya, Yoko| Mikami, Masafumi| Kawaura, Kanako| Endo, Masaki| Onishi, Kazumitsu| Hayashi, Takeshi| Sato, Kazuhiro|
Keywords CRISPR/Cas9 Qsd1 multiple mutation seed dormancy wheat
Published Date 2019-07-30
Publication Title Cell Reports
Volume volume28
Issue issue5
Publisher Cell Press
Start Page 1362
End Page 1369
ISSN 22111247
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
File Version publisher
PubMed ID 31365876
DOI 10.1016/j.celrep.2019.06.090
Related Url isVersionOf https://doi.org/10.1016/j.celrep.2019.06.090
Characterization of burdock mottle virus, a novel member of the genus Benyvirus, and the identification of benyvirus-related sequences in the plant and insect genomes.
FullText URL VirusRes_177_1_75.pdf Table 1-revised.pdf FigS-revised.pdf Figs_revised.pdf Table S.pdf
Author Kondo, Hideki| Hirano, Shuichi| Chiba, Sotaro| Andika, Ida Bagus| Hirai, Makoto| Maeda, Takanori| Tamada, Tetsuo|
Keywords AlkB Benyvirus Burdock mottle virus Endogenous viral element Paleovirology Transcriptome shotgun assembly
Published Date 2013-10
Publication Title Virus Research
Volume volume177
Issue issue1
Publisher Elsevier Science
Start Page 75
End Page 86
ISSN 01681702
NCID AA10642076
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
File Version author
PubMed ID 23911632
DOI 10.1016/j.virusres.2013.07.015
Web of Science KeyUT 000324974100009
Related Url isVersionOf https://doi.org/10.1016/j.virusres.2013.07.015
Sequence and phylogenetic analyses of novel totivirus-like double-stranded RNAs from field-collected powdery mildew fungi
FullText URL VirusRes_213_353.pdf tables_revised.pdf Fig S.pdf Supplementary_tables_revised.pdf
Author Kondo, Hideki| Hisano, Sakae| Chiba, Sotaro| Maruyama, Kazuyuki| Andika, Ida Bagus| Toyoda, Kazuhiro| Fujimori, Fumihiro| Suzuki, Nobuhiro|
Keywords Deep sequencing Double stranded RNA virus Powdery mildew Saccharomyces cerevisiae virus L-A Totivirus Ustilago maydis virus H1
Published Date 2016-02
Publication Title Virus Research
Volume volume213
Publisher Elsevier Science
Start Page 353
End Page 364
ISSN 01681702
NCID AA10642076
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
File Version author
PubMed ID 26592174
DOI 10.1016/j.virusres.2015.11.015
Web of Science KeyUT 000371840600042
Related Url isVersionOf https://doi.org/10.1016/j.virusres.2015.11.015
Transcriptomic comparison between beetle strains selected for short and long durations of death feigning
FullText URL SciRep_9_1_14001_p.pdf
Author Uchiyama, Hironobu| Sasaki, Ken| Hinosawa, Shogo| Tanaka, Keisuke| Matsumura, Kentarou| Yajima, Shunsuke| Miyatake, Takahisa|
Published Date 2019-09-30
Publication Title Scientific reports
Volume volume9
Issue issue1
Publisher Springer Nature
Start Page 14001
ISSN 20452322
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © The Author(s) 2019
File Version publisher
PubMed ID 31570743
DOI 10.1038/s41598-019-50440-5
Web of Science KeyUT 000488223900004
Related Url isVersionOf https://doi.org/10.1038/s41598-019-50440-5
Two novel fungal negative-strand RNA viruses related to mymonaviruses and phenuiviruses in the shiitake mushroom (Lentinula edodes)
FullText URL Virology_533_125.pdf
Author Lin, Yu-Hsin| Fujita, Miki| Chiba, Sotaro| Hyodo, Kiwamu| Andika, Ida Bagus| Suzuki, Nobuhiro| Kondo, Hideki|
Keywords Ambisense Bipartite genome Endogenous virus element Evolution High-throughput sequencing Lentinula edodes Mymonaviridae Negative-strand RNA virus Phenuiviridae Shitake mushroom
Note This fulltext will be available in May 2020|
Published Date 2019-07-31
Publication Title Virology
Volume volume533
Publisher Academic Press
Start Page 125
End Page 136
ISSN 00426822
NCID AA00884454
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
File Version author
PubMed ID 31153047
DOI 10.1016/j.virol.2019.05.008
Web of Science KeyUT 000474941300015
Related Url isVersionOf https://doi.org/10.1016/j.virol.2019.05.008
Induction of Expandable Tissue-Specific Progenitor Cells from Human Pancreatic Tissue through Transient Expression of Defined Factors
FullText URL fulltext.pdf
Author Noguchi, Hirofumi| Miyagi-Shiohira, Chika| Nakashima, Yoshiki| Kinjo, Takao| Kobayashi, Naoya| Saitoh, Issei| Watanabe, Masami| Shapiro, A. M. James| Kin, Tatsuya|
Keywords induced tissue-specific progenitor cells iTP induced tissue-specific stem cells iTS induced pluripotent stem cells iPSCs reprogramming factors pancreas
Published Date 2019-06-14
Publication Title Molecular Therapy - Methods and Clinical Development
Volume volume13
Publisher Cell Press
Start Page 243
End Page 252
ISSN 2329-0501
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2019 The Author(s).
File Version publisher
PubMed ID 30828587
DOI 10.1016/j.omtm.2019.01.011
Web of Science KeyUT 000471284200022
Related Url isVersionOf https://doi.org/10.1016/j.omtm.2019.01.011
A unique Japanese CPEO family with a novel homozygous m.14819 T > G (p. S25A) substitution
FullText URL JNS400_145.pdf Fig.pdf
Author Nomura, Emi| Ohta, Yasuyuki| Tadokoro, Koh| Sato, Kota| Sasaki, Ryo| Takahashi, Yoshiaki| Yamashita, Toru| Takemoto, Mami| Hishikawa, Nozomi| Goto, Yu-ichi| Abe, Koji|
Keywords CPEO Homozygous Mitochondrial DNA
Published Date 2019-05-15
Publication Title Journal of the Neurological Sciences
Volume volume400
Publisher Elsevier
Start Page 145
End Page 147
ISSN 0022510X
NCID AA00703265
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2019 Elsevier B.V. All rights reserved.
File Version author
PubMed ID 30951992
DOI 10.1016/j.jns.2019.03.029
Web of Science KeyUT 000466828000028
Related Url isVersionOf https://doi.org/10.1016/j.jns.2019.03.029
A novel insect-infecting virga/nege-like virus group and its pervasive endogenization into insect genomes
FullText URL VirusRes_262_37.pdf FIG_S1-7_revised.pdf TableS1-3.pdf
Author Kondo, Hideki| Chiba, Sotaro| Maruyama, Kazuyuki| Andika, Ida Bagus| Suzuki, Nobuhiro|
Keywords Bumblebee Endogenous viral element Evolution Insect Plant alpha-like virus Transcriptome shotgun assembly Whole genome shotgun assembly
Published Date 2019-03-31
Publication Title Virus Research
Volume volume262
Publisher Elsevier Science
Start Page 37
End Page 47
ISSN 01681702
NCID AA10642076
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2017 Elsevier B.V. All rights reserved.
File Version author
PubMed ID 29169832
DOI 10.1016/j.virusres.2017.11.020
Web of Science KeyUT 000459523800007
Related Url isVersionOf https://doi.org/10.1016/j.virusres.2017.11.020
遺伝性乳癌卵巣癌をめぐる最新の動向
Title Alternative Current topics in hereditary breast and ovarian cancer
FullText URL 131_89.pdf
Author Ohsumi, Shozo|
Keywords 遺伝性乳癌卵巣癌 遺伝学的検査 PARP阻害薬 multi-gene panel 検査
Publication Title Journal of Okayama Medical Association
Published Date 2019-08-01
Volume volume131
Issue issue2
Start Page 89
End Page 96
ISSN 0030-1558
Related Url isVersionOf https://doi.org/10.4044/joma.131.89
language Japanese
Copyright Holders Copyright (c) 2019 岡山医学会
File Version publisher
DOI 10.4044/joma.131.89
NAID 130007700794
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