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Title Alternative Evaluator of adaptability of S. cerevisiae to grape juice using the oversxpression profiling ADOPT method
FullText URL srfa_113_001_006.pdf
Author Moriya, Hisao| Ono, Chiyuki Kohata |
Abstract The authors have recently developed the overexpression profiling ADOPT method. In the ADOPT method, yeast strains overexpressing most of the genes in the budding yeast Saccharomyces cerevisiae genome are mixed and competitively cultured, and the genes overexpressed in the enriched strains are systematically identified. Furthermore, the identified genes can be used to identify bottleneck factors that are necessary but lacking for growth of S. cerevisiae under given conditions. In our previous studies, we have identified bottlenecks in artificially created stress environments in the laboratory, but in this study, we used grape juice for winemaking as an example to see if industrial bottlenecks can be identified. ADOPT experiments with sulfite-added grape juice used in conventional winemaking resulted in a strong enrichment of strains overexpressing the sulfite pump SSU1 and its transcription factor FZF1. Since enhancement of SSU1 function is known to occur in wine yeast acclimation, ADOPT was also shown to be useful in the search for industrial bottlenecks. On the other hand, no genes were strongly enriched by ADOPT in grape juice without sulfite addition, suggesting that grape juice is a balanced medium with few bottlenecks for S. cerevisiae growth.
Keywords yeast S. cerevisiae overexpression wine making
Publication Title Scientific Reports of the Faculty of Agriculture, Okayama University
Published Date 2024-02-01
Volume volume113
Start Page 1
End Page 6
ISSN 2186-7755
language Japanese
File Version publisher
FullText URL fulltext20240205-01.pdf
Author Tokushige, Keisuke| Abe, Takumi|
Keywords C3-N1' bisindoles bromination umpolung rivularin A alkaloid
Note This is the peer reviewed version of the following article: [K. Tokushige, T. Abe, Chem. Eur. J. 2024, 30, e202302963. https://doi.org/10.1002/chem.202302963], which has been published in final form at [https://doi.org/10.1002/chem.202302963]. This article may be used for non-commercial purposes in accordance with Wiley Terms and Conditions for Use of Self-Archived Versions. This article may not be enhanced, enriched or otherwise transformed into a derivative work, without express permission from Wiley or by statutory rights under applicable legislation. Copyright notices must not be removed, obscured or modified. The article must be linked to Wiley’s version of record on Wiley Online Library and any embedding, framing or otherwise making available the article or pages thereof by third parties from platforms, services and websites other than Wiley Online Library must be prohibited.| This fulltext file will be available in Jan. 2025.|
Published Date 2024-01-08
Publication Title Chemistry – A European Journal
Volume volume30
Issue issue11
Publisher Wiley
Start Page e202302963
ISSN 0947-6539
NCID AA11076269
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2023 Wiley-VCH GmbH
File Version author
PubMed ID 37988219
DOI 10.1002/chem.202302963
Web of Science KeyUT 001142083100001
Related Url isVersionOf https://doi.org/10.1002/chem.202302963
FullText URL fulltext.pdf
Author Hashimoto, Mana| Takahashi, Haruka| Tabata-Okubo, Kaori| Nagaoka, Noriyuki| Tokunaga, Kazuaki| Matsumori, Haruka| Ishihara, Yoshihito| Kaku, Masaru| Iimura, Tadahiro| Hara, Toru| Kamioka, Hiroshi|
Note The version of record of this article, first published in Scientific Reports, is available online at Publisher’s website: http://dx.doi.org/10.1038/s41598-023-48786-y|
Published Date 2023-12-12
Publication Title Scientific Reports
Volume volume13
Issue issue1
Publisher Nature Portfolio
Start Page 22028
ISSN 2045-2322
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © The Author(s) 2023
File Version publisher
PubMed ID 38086873
DOI 10.1038/s41598-023-48786-y
Web of Science KeyUT 001126179100035
Related Url isVersionOf https://doi.org/10.1038/s41598-023-48786-y
FullText URL fulltext.pdf
Author Kobayashi, Hiroki| Ouchi, Tomoki| Kitamura, Wataru| Asakura, Shoji| Yano, Tomofumi| Takeda, Hiromasa| Tokuda, Yoshiyuki| Yoshino, Tadashi| Maeda, Yoshinobu|
Keywords cold agglutinin disease severe acute respiratory syndrome coronavirus 2 sutimlimab
Published Date 2023-12-26
Publication Title Journal of Clinical and Experimental Hematopathology
Volume volume63
Issue issue4
Publisher The Japanese Society for Lymphoreticular Tissue Research
Start Page 246
End Page 250
ISSN 1346-4280
NCID AA11556796
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2023 The Japanese Society for Lymphoreticular Tissue Research
File Version publisher
PubMed ID 38148014
DOI 10.3960/jslrt.23040
Web of Science KeyUT 001134578000003
Related Url isVersionOf https://doi.org/10.3960/jslrt.23040
FullText URL fulltext.pdf
Author Kato, Yusuke| Kuroda, Hiroshi| Ozawa, Shin-Ichiro| Saito, Keisuke| Dogra, Vivek| Scholz, Martin| Zhang, Guoxian| de Vitry, Catherine| Ishikita, Hiroshi| Kim, Chanhong| Hippler, Michael| Takahashi, Yuichiro| Sakamoto, Wataru|
Keywords post-translational modification Arabidopsis thaliana protein degradation photosystem II photo-oxidative damage tryptophan oxidation Chlamydomonas reinhardtii
Published Date 2023-11-21
Publication Title eLife
Volume volume12
Publisher eLife Sciences Publications
Start Page RP88822
ISSN 2050-084X
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © Kato, Kuroda, Ozawa et al.
File Version publisher
PubMed ID 37986577
DOI 10.7554/eLife.88822
Web of Science KeyUT 001134641800001
Related Url isVersionOf https://doi.org/10.7554/eLife.88822
FullText URL fulltext20240213-01.pdf
Author Urata, Tomohiro| Naoi, Yusuke| Jiang, Aixiang| Boyle, Merrill| Sunami, Kazutaka| Imai, Toshi| Nawa, Yuichiro| Hiramatsu, Yasushi| Yamamoto, Kazuhiko| Fujii, Soichiro| Yoshida, Isao| Yano, Tomofumi| Chijimatsu, Ryota| Murakami, Hiroyuki| Ikeuchi, Kazuhiro| Kobayashi, Hiroki| Tani, Katsuma| Ujiie, Hideki| Inoue, Hirofumi| Tomida, Shuta| Yamamoto, Akira| Kondo, Takumi| Fujiwara, Hideaki| Asada, Noboru| Nishimori, Hisakazu| Fujii, Keiko| Fujii, Nobuharu| Matsuoka, Ken-ichi| Sawada, Keisuke| Momose, Shuji| Tamaru, Jun-ichi| Nishikori, Asami| Sato, Yasuharu| Yoshino, Tadashi| Maeda, Yoshinobu| Scott, David W.| Ennishi, Daisuke|
Published Date 2023-12-14
Publication Title Blood Advances
Volume volume7
Issue issue24
Publisher American Society of Hematology
Start Page 7459
End Page 7470
ISSN 2473-9529
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2023 by The American Society of Hematology.
File Version publisher
PubMed ID 37552496
DOI 10.1182/bloodadvances.2023010402
Web of Science KeyUT 001141306600001
Related Url isVersionOf https://doi.org/10.1182/bloodadvances.2023010402
FullText URL fulltext.pdf
Author Tsuji, Kenji| Nakanoh, Hiroyuki| Takahashi, Kensaku| Morita, Takafumi| Sang, Yizhen| Fukushima, Kazuhiko| Matsuoka-Uchiyama, Natsumi| Onishi, Yasuhiro| Uchida, Haruhito A.| Kitamura, Shinji| Wada, Jun|
Published Date 2023-12
Publication Title Kidney Medicine
Volume volume5
Issue issue12
Publisher Elsevier
Start Page 100733
ISSN 2590-0595
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2023 The Authors.
File Version publisher
PubMed ID 38046910
DOI 10.1016/j.xkme.2023.100733
Web of Science KeyUT 001124701500001
Related Url isVersionOf https://doi.org/10.1016/j.xkme.2023.100733
Author Tada, Naoya| Uemori, Takeshi| Sakamoto, Junji|
Keywords Mechanical engineering Microdevices made of thin metal sheet Pure titanium Deformation Microscopic characterization and microanalysis Plastic deformation Microscopic inhomogeneity and stress concentration Slip activity control
Note © 2023 Elsevier Ltd. This manuscript version is made available under the CC-BY-NC-ND 4.0 license https://creativecommons.org/licenses/by-nc-nd/4.0/| This fulltext file will be available in Sep. 2025.|
Published Date 2023-11
Publication Title Engineering Failure Analysis
Volume volume153
Publisher Elsevier
Start Page 107623
ISSN 1350-6307
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2023 Elsevier Ltd.
File Version author
DOI 10.1016/j.engfailanal.2023.107623
Web of Science KeyUT 001148684500001
Related Url isVersionOf https://doi.org/10.1016/j.engfailanal.2023.107623
FullText URL fulltext20240208-01.pdf
Author Ratnayake, Dilan M.| Tanaka, Ryoji| Nakamura, Eizo|
Keywords Cr isotopes DS-TE-TIMS Cation exchange resin Low blank High precision
Note © 2023 Elsevier B.V. This manuscript version is made available under the CC-BY-NC-ND 4.0 license https://creativecommons.org/licenses/by-nc-nd/4.0/| This fulltext file will be available in Aug. 2024.|
Published Date 2023-10-16
Publication Title Analytica Chimica Acta
Volume volume1278
Publisher Elsevier
Start Page 341723
ISSN 0003-2670
NCID AA00524834
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2023 Elsevier B.V.
File Version author
PubMed ID 37709464
DOI 10.1016/j.aca.2023.341723
Web of Science KeyUT 001069672800001
Related Url isVersionOf https://doi.org/10.1016/j.aca.2023.341723
FullText URL fulltext20240226-02.pdf
Author Ikeda, Hideki| Nagasaki, Joji| Shimizu, Daiki| Katsuya, Yuki| Horinouchi, Hidehito| Hosomi, Yukio| Tanji, Etsuko| Iwata, Takekazu| Itami, Makiko| Kawazu, Masahito| Ohe, Yuichiro| Suzuki, Takuji| Togashi, Yosuke|
Keywords Thymic epithelial tumor Cancer immunotherapy CD80/CD86 MHC Memory precursor effector T cell
Published Date 2023-10
Publication Title JTO Clinical and Research Reports
Volume volume4
Issue issue10
Publisher Elsevier
Start Page 100573
ISSN 2666-3643
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2023 The Authors.
File Version publisher
PubMed ID 37799325
DOI 10.1016/j.jtocrr.2023.100573
Web of Science KeyUT 001161095400001
Related Url isVersionOf https://doi.org/10.1016/j.jtocrr.2023.100573
FullText URL fulltext20240206-04.pdf
Author Sato, Yukiyo| Suzuki, Nobuhiro|
Note © 2023 Elsevier Ltd. This manuscript version is made available under the CC-BY-NC-ND 4.0 license https://creativecommons.org/licenses/by-nc-nd/4.0/| This fulltext file will be available in Jun. 2024.|
Published Date 2023-10
Publication Title Current Opinion in Microbiology
Volume volume75
Publisher Elsevier
Start Page 102337
ISSN 1369-5274
NCID AA11313229
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2023 Elsevier Ltd.
File Version author
PubMed ID 37343415
DOI 10.1016/j.mib.2023.102337
Web of Science KeyUT 001025990600001
Related Url isVersionOf https://doi.org/10.1016/j.mib.2023.102337
FullText URL fulltext20240109-01.pdf fig1_20240109-01.pdf fig2_20240109-01.pdf fig3_20240109-01.pdf fig4_20240109-01.pdf
Author Okada, Koki| Morimoto, Yu| Shiraishi, Yukine| Tamura, Takashi| Mayama, Shigeki| Kadono, Takashi| Adachi, Masao| Ifuku, Kentaro| Nemoto, Michiko|
Keywords Diatom Genetic transformation Nitzschia Multi-pulse electroporation
Note This version of the article has been accepted for publication, after peer review (when applicable) and is subject to Springer Nature’s AM terms of use, but is not the Version of Record and does not reflect post-acceptance improvements, or any corrections. The Version of Record is available online at: http://dx.doi.org/10.1007/s10126-023-10273-w| This fulltext file will be available in Dec. 2024.|
Published Date 2023-12-10
Publication Title Marine Biotechnology
Volume volume25
Issue issue6
Publisher Springer Science and Business Media LLC
Start Page 1208
End Page 1219
ISSN 1436-2228
NCID AA11357643
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature 2023
File Version author
PubMed ID 38071657
DOI 10.1007/s10126-023-10273-w
Web of Science KeyUT 001120097200001
Related Url isVersionOf https://doi.org/10.1007/s10126-023-10273-w
FullText URL fulltext.pdf
Author Ando, Kakeru| Watanabe, Minoru| Watanabe, Nobuya|
Note © 2023 Optica Publishing Group. Users may use, reuse, and build upon the article, or use the article for text or data mining, so long as such uses are for non-commercial purposes and appropriate attribution is maintained. All other rights are reserved.|
Published Date 2023-11-06
Publication Title Optics Express
Volume volume31
Issue issue23
Publisher Optica Publishing Group
Start Page 38529
End Page 38539
ISSN 1094-4087
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2023 Optica Publishing Group under the terms of the Optica Open Access Publishing Agreement
File Version publisher
PubMed ID 38017956
DOI 10.1364/OE.500666
Web of Science KeyUT 001108090500007
Related Url isVersionOf https://doi.org/10.1364/OE.500666
FullText URL fulltext.pdf
Author Tsukioki, Takahiro| Khan, Seema A.| Shien, Tadahiko|
Keywords Breast cancer Prevention Risk reduction mastectomy Chemoprevention Methylation
Note The version of record of this article, first published in Genes and Environment, is available online at Publisher’s website: http://dx.doi.org/10.1186/s41021-023-00287-0|
Published Date 2023-12-12
Publication Title Genes and Environment
Volume volume45
Issue issue1
Publisher BMC
Start Page 35
ISSN 1880-7046
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © The Author(s) 2023.
File Version publisher
PubMed ID 38082340
DOI 10.1186/s41021-023-00287-0
Web of Science KeyUT 001121724100001
Related Url isVersionOf https://doi.org/10.1186/s41021-023-00287-0
FullText URL fulltext.pdf
Author Shimooka, So| Himuro, Hiroki| Gofuku, Akio|
Keywords hexagonal pyramid shape of flexible actuator anisotropic stiffness extension-type flexible pneumatic actuator analytical model of shape
Published Date 2023-11-14
Publication Title Actuators
Volume volume12
Issue issue11
Publisher MDPI
Start Page 424
ISSN 2076-0825
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2023 by the authors.
File Version publisher
DOI 10.3390/act12110424
Web of Science KeyUT 001120904300001
Related Url isVersionOf https://doi.org/10.3390/act12110424
FullText URL fulltext.pdf
Author Miyazaki, Midoka| Asakura, Mami| Ide, Toru| Hayakawa, Tohru|
Keywords mosquito-larvicidal toxin Bacillus thuringiensis TK-E6 Culex pipiens mosquito larvae site-directed mutagenesis electrophysiologic analysis
Published Date 2023-12-01
Publication Title Biology
Volume volume12
Issue issue12
Publisher MDPI
Start Page 1481
ISSN 2079-7737
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2023 by the authors.
File Version publisher
PubMed ID 38132307
DOI 10.3390/biology12121481
Web of Science KeyUT 001132518500001
Related Url isVersionOf https://doi.org/10.3390/biology12121481
Title Alternative Parameter study of strong ground motion simulation for the Median Tectonic Line in the case of the Iyo-Bungo Earthquake of September 1st, 1596
JaLCDOI 10.18926/66189
FullText URL jdc_003_021.pdf
Author OKUMA, Yurie| KUMAMOTO, Takashi|
Abstract The purpose of this study is to verify the fault length and earthquake magnitude of the Iyo-Bungo earthquake in 1596 estimated by Ishibashi (2019) using historical documents written in the same period. According to Ishibashi (2019), the length of the source fault was estimated to have been less than 100 km and the earthquake magnitude was roughly estimated to have been around 7.5. In order to attempt to reproduce the interpretation, we conducted two different strong ground motion simulations: the attenuation equation method and the characterized source model method, both used in the Headquarters for Earthquake Research Promotion. We simulated earthquake ground motions based on several source fault models including estimation by Ishibashi (2019). For the length of the fault, a 100 km length corresponding to the Iyonada segment of the Median Tectonic Line active fault system was the first model and 130 km and 160 km models extending onshore to the northeast were taken into account as epistemic uncertainties. Regarding the dip angle of the fault, both 40 and 90 degree models were considered also as epistemic uncertainties. Our calculation with other uncertainties shows that the models with a fault length of 100 km with a dip angle of 90 or 40 degrees are consistent with the seismic intensity and seismogenic fault length of offshore fault estimated by Ishibashi (2019) based on reliable first-grade documents. If low-certainty intensity estimates by Ishibashi (2019) are used to evaluate fault length in our calculation, the possibility of 130 or 160 km length models with additional onshore faults will remain. Our results show that the strong ground motion simulation could reinforce the expert’s interpretation of historical documents and propose quantitative source fault models for historical earthquakes.
Keywords Median Tectonic Line 1596 Iyo-Bungo earthquake strong ground motion simulation epistemic uncertainties
Amo Type 論文 (Research article)
Publication Title Dynamics of Civilizations
Published Date 2024-03-25
Volume volume3
Publisher 岡山大学文明動態学研究所
Start Page 21
End Page 40
ISSN 2436-8326
Content Type Journal Article
language Japanese
Copyright Holders © 2024 by RIDC
File Version publisher
FullText URL fulltext.pdf
Author Yamashita, Toru| Nakano, Yumiko| Sasaki, Ryo| Tadokoro, Koh| Omote, Yoshio| Yunoki, Taijun| Kawahara, Yuko| Matsumoto, Namiko| Taira, Yuki| Matsuoka, Chika| Morihara, Ryuta| Abe, Koji|
Keywords amyotrophic lateral sclerosis clinical trial CL2020 multilineage-differentiating stress-enduring (Muse) cells intravenous administration
Published Date 2023
Publication Title Cell Transplantation
Volume volume32
Publisher SAGE Publications
ISSN 0963-6897
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © The Author(s) 2023
File Version publisher
PubMed ID 38014622
DOI 10.1177/09636897231214370
Web of Science KeyUT 001109624600001
Related Url isVersionOf https://doi.org/10.1177/09636897231214370
JaLCDOI 10.18926/AMO/66148
FullText URL 77_6_567.pdf
Author Matsumoto, Naomi| Higuchi, Chigusa| Miyaji, Chikara| Mitsuhashi, Toshiharu| Hagiya, Hideharu| Takao, Soshi| Yorifuji, Takashi|
Abstract This paper presents the results of a series of surveys conducted from July 2021 to March 2023 to investigate the post-vaccination adverse reactions to the mRNA-1273 (Moderna) vaccine among faculty, staff, and students at Okayama University. These studies complement the official surveys conducted by the Ministry of Health, Labour and Welfare (MHLW) and provide a more representative picture of adverse reactions in the general population including large numbers of healthy young people. Pain, swelling, redness at the injection site, fever, headache, and malaise were the main adverse reactions reported. The proportion of adverse reactions was generally higher after the second vaccination and decreased with each additional vaccination. No statistically significant differences in the adverse reactions were found for males and females and those with/without a history of allergy, but a lower proportion of fever was observed in older participants and those with underlying medical conditions. We also evaluated the association between adverse reactions and antibody titers after the third vaccination and found no significant differences in antibody levels one month after vaccination. This series of studies highlights the importance of conducting surveys in diverse populations to provide a more representative picture of post-vaccination adverse reactions during a pandemic.
Keywords coronavirus disease 2019 adverse reactions mRNA vaccine antibody titers young adults
Amo Type Review
Publication Title Acta Medica Okayama
Published Date 2023-12
Volume volume77
Issue issue6
Publisher Okayama University Medical School
Start Page 567
End Page 575
ISSN 0386-300X
NCID AA00508441
Content Type Journal Article
language English
Copyright Holders Copyright Ⓒ 2023 by Okayama University Medical School
File Version publisher
Refereed True
PubMed ID 38145930
Web of Science KeyUT 001164631200001
FullText URL fulltext20231129-01.pdf
Author Taira, Aoi| Okamoto, Ryuichi| Sumi, Tomonari| Koga, Kenichiro|
Published Date 2023
Publication Title Physical Chemistry Chemical Physics
Volume volume25
Issue issue45
Publisher Royal Society of Chemistry (RSC)
Start Page 31107
End Page 31117
ISSN 1463-9076
NCID AA11301773
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © the Owner Societies 2023
File Version publisher
PubMed ID 37947179
DOI 10.1039/d3cp03799a
Web of Science KeyUT 001099200400001
Related Url isVersionOf https://doi.org/10.1039/d3cp03799a