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FullText URL fulltext20220413-6-2.pdf
Author Sato, Yukiyo| Shahi, Sabitree| Telengech, Paul| Hisano, Sakae| Cornejo, Carolina| Rigling, Daniel| Kondo, Hideki| Suzuki, Nobuhiro|
Keywords Splipalmivirus Capsidless RNA virus Cryphonectria naterciae Narnavirus Fungal virus Mycovirus
Note © 2021 Elsevier B.V. This manuscript version is made available under the CC-BY-NC-ND 4.0 License. http://creativecommons.org/licenses/by-nc-nd/4.0/. This is the accepted manuscript version. The formal published version is available at [https://doi.org/10.1016/j.virusres.2021.198606] .|
Published Date 2022-01
Publication Title Virus Research
Volume volume307
Issue issue2
Publisher Elsevier BV
Start Page 198606
ISSN 0168-1702
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2021 Elsevier B.V.
File Version author
PubMed ID 34688782
DOI 10.1016/j.virusres.2021.198606
Web of Science KeyUT 000767885500002
Related Url isVersionOf https://doi.org/10.1016/j.virusres.2021.198606
FullText URL fulltext20220413-6-1.pdf
Author Telengech, Paul| Shahi, Sabitree| Kondo, Hideki| Suzuki, Nobuhiro|
Note This version of the article has been accepted for publication, after peer review (when applicable) and is subject to Springer Nature’s AM terms of use, but is not the Version of Record and does not reflect post-acceptance improvements, or any corrections. The Version of Record is available online at: http://dx.doi.org/10.1007/s00705-022-05372-3| This fulltext is available in March 2023.|
Published Date 2022-3-4
Publication Title Archives of Virology
Volume volume167
Issue issue4
Publisher Springer Science and Business Media LLC
Start Page 1201
End Page 1204
ISSN 0304-8608
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © The Author(s), under exclusive licence to Springer-Verlag GmbH Austria, part of Springer Nature 2022
File Version author
PubMed ID 35246731
DOI 10.1007/s00705-022-05372-3
Web of Science KeyUT 000764476800001
Related Url isVersionOf https://doi.org/10.1007/s00705-022-05372-3
JaLCDOI 10.18926/AMO/62807
FullText URL 75_6_685.pdf
Author Yamashita, Mampei| Kuroki, Tamotsu| Hamada, Takashi| Hirayama, Takanori| Tokunaga, Takayuki| Yamanouchi, Kosho| Takeshita, Hiroaki| Maeda, Shigeto|
Abstract Magnetic resonance cholangiopancreatography (MRCP) is a non-invasive imaging technique that provides high-quality visualization of the biliary tree, including the gallbladder. This study aimed to evaluate the useful-ness of preoperative MRCP for acute cholecystitis in predicting technical difficulties during laparoscopic chole-cystectomy (LC). A total of 168 patients who underwent LC with preoperative MRCP were enrolled in this study. Patients were divided into two groups according to preoperative MRCP findings: the visualized group (n = 126), in which the entire gallbladder could be visualized; and the non-visualized group (n = 42), in which the entire gallbladder could not be visualized. The perioperative characteristics and postoperative complica-tions of the two groups were retrospectively analyzed. Operation time was longer in the non-visualized group (median 101.5 vs. 143.5 min; p < 0.001). The non-visualized group had significantly more intraoperative blood loss than the visualized group (median 5 vs. 10 g; p = 0.05). The rate of conversion to open cholecystectomy was significantly higher in the non-visualized group (1.6 vs. 9.5%; p = 0.03). In conclusion, patients in the non- visualized group showed higher difficulty in performance of LC. Our MRCP-based classification is a simple and effective means of predicting difficulties in performing LC for acute cholecystitis.
Keywords laparoscopic cholecystectomy magnetic resonance cholangiopancreatography acute cholecystitis gallbladder disease non-invasive imaging
Amo Type Original Article
Publication Title Acta Medica Okayama
Published Date 2021-12
Volume volume75
Issue issue6
Publisher Okayama University Medical School
Start Page 685
End Page 689
ISSN 0386-300X
NCID AA00508441
Content Type Journal Article
language English
Copyright Holders Copyright Ⓒ 2021 by Okayama University Medical School
File Version publisher
Refereed True
PubMed ID 34955535
Web of Science KeyUT 000735297900003
NAID 120007180285
FullText URL fulltext.pdf
Author Kondo, Hideki| Yoshida, Naoto| Fujita, Miki| Maruyama, Kazuyuki| Hyodo, Kiwamu| Hisano, Hiroshi| Tamada, Tetsuo| Andika, Ida Bagus| Suzuki, Nobuhiro|
Keywords Betaflexiviridae quinvirus bymovirus yellow mosaic disease wheat virome soil borne variants
Published Date 2021-08-19
Publication Title Frontiers In Microbiology
Volume volume12
Publisher Frontiers Media SA
Start Page 715545
ISSN 1664-302X
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2021 Kondo, Yoshida, Fujita, Maruyama, Hyodo, Hisano, Tamada, Andika and Suzuki.
File Version publisher
PubMed ID 34489904
DOI 10.3389/fmicb.2021.715545
Web of Science KeyUT 000692554100001
Related Url isVersionOf https://doi.org/10.3389/fmicb.2021.715545
FullText URL fulltext.pdf
Author Mori, Tomoaki| Warner, Chiaki| Ohno, Serika| Mori, Koichi| Tobimatsu, Takamasa| Sera, Takashi|
Keywords Plum pox virus Complete genome sequence Phylogenetic analysis Sequence alignment analysis Genetic variation
Published Date 2021-07-10
Publication Title BMC Research Notes
Volume volume14
Issue issue1
Publisher Springer Nature
Start Page 266
ISSN 1756-0500
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © The Author(s) 2021.
File Version publisher
PubMed ID 34246294
DOI 10.1186/s13104-021-05683-9
Web of Science KeyUT 000672644300002
Related Url isVersionOf https://doi.org/10.1186/s13104-021-05683-9
Author Sakamoto, Keiji| Tomonari, Misaki| Ariya, Uyanga| Nakagiri, Erika| Matsumoto, Tetsuya| Akaji, Yasuaki| Otoda, Takashi| Hirobe, Muneto| Nachin, Baatarbileg|
Keywords Disturbance Forest floor Salvage logging Seed source Succession
Note metadata only access. The Version of Record is available online at: http://dx.doi.org/10.1007/s11355-021-00457-8|
Published Date 2021-04-17
Publication Title Landscape and Ecological Engineering
Volume volume17
Publisher Springer Science and Business Media LLC
Start Page 267
End Page 279
ISSN 1860-1871
NCID AA12090017
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
File Version none
DOI 10.1007/s11355-021-00457-8
Web of Science KeyUT 000640827800001
Related Url isVersionOf https://doi.org/10.1007/s11355-021-00457-8
FullText URL fulltext20210525_1.pdf
Author Laukhtina, Ekaterina| Abufaraj, Mohammad| Al-Ani, Abdallah| Ali, Mustafa Rami| Mori, Keiichiro| Moschini, Marco| Quhal, Fahad| Sari Motlagh, Reza| Pradere, Benjamin| Schuettfort, Victor M.| Mostafaei, Hadi| Katayama, Satoshi| Grossmann, Nico C.| Fajkovic, Harun| Soria, Francesco| Enikeev, Dmitry| Shariat, Shahrokh F.|
Keywords Non–muscle-invasive bladder cancer Bladder cancer Intermediate risk Intravesical therapy Network meta-analysis
Published Date 2021-03-21
Publication Title European Urology Focus
Publisher Elsevier
ISSN 24054569
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2021 The Authors.
File Version publisher
PubMed ID 33762203
DOI 10.1016/j.euf.2021.03.016
NAID 120007039929
Related Url isVersionOf https://doi.org/10.1016/j.euf.2021.03.016
FullText URL Nat_Microbiol_15001.pdf
Author Zhang, Rui| Hisano, Sakae| Tani, Akio| Kondo, Hideki| Kanematsu, Satoko| Suzuki, Nobuhiro|
Keywords Molecular evolution Viral genetics
Published Date 2016-01-11
Publication Title Nature Microbiology
Volume volume1
Issue issue1
Publisher Nature Research
Start Page 15001
ISSN 2058-5276
NCID AA1278421X
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
File Version author
PubMed ID 27571749
DOI 10.1038/NMICROBIOL.2015.1
Web of Science KeyUT 000381577400001
Related Url isVersionOf https://doi.org/10.1038/nmicrobiol.2015.1
FullText URL fulltext.pdf
Author Masuda, Kanae| Yamamoto, Eiji| Shirasawa, Kenta| Onoue, Noriyuki| Kono, Atsushi| Ushijima, Koichiro| Kubo, Yasutaka| Tao, Ryutaro| Henry, Isabelle M.| Akagi, Takashi|
Keywords flexible sexuality monoecy polyploid GWAS
Published Date 2020-06-17
Publication Title DNA Research
Volume volume27
Issue issue3
Publisher OXFORD UNIV PRESS
Start Page dsaa012
ISSN 1340-2838
NCID AA11095219
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © The Author(s) 2020.
File Version publisher
PubMed ID 32761076
DOI 10.1093/dnares/dsaa012
Web of Science KeyUT 000577169400006
Related Url isVersionOf https://doi.org/10.1093/dnares/dsaa012
FullText URL fulltext.pdf
Author Mitalo, Oscar W.| Otsuki, Takumi| Okada, Rui| Obitsu, Saeka| Masuda, Kanae| Hojo, Yuko| Matsuura, Takakazu| Mori, Izumi C.| Abe, Daigo| Asiche, William O.| Akagi, Takashi| Kubo, Yasutaka| Ushijima, Koichiro|
Keywords 1-methylcyclopropene carotenoids chlorophyll Citrus limon ethylene low temperature peel degreening phytohormones transcriptome
Published Date 2020-05-06
Publication Title Journal of Experimental Botany
Volume volume71
Issue issue16
Publisher Oxford University Press
Start Page 4778
End Page 4796
ISSN 0022-0957
NCID AA00697526
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © The Author(s) 2020.
File Version publisher
PubMed ID 32374848
DOI 10.1093/jxb/eraa206
Web of Science KeyUT 000573250000015
Related Url isVersionOf https://doi.org/10.1093/jxb/eraa206
FullText URL fulltext.pdf
Author Miyata, Makoto| Robinson, Robert C.| Uyeda, Taro Q. P.| Fukumori, Yoshihiro| Fukushima, Shun‐ichi| Haruta, Shin| Homma, Michio| Inaba, Kazuo| Ito, Masahiro| Kaito, Chikara| Kato, Kentaro| Kenri, Tsuyoshi| Kinosita, Yoshiaki| Kojima, Seiji| Minamino, Tohru| Mori, Hiroyuki| Nakamura, Shuichi| Nakane, Daisuke| Nakayama, Koji| Nishiyama, Masayoshi| Shibata, Satoshi| Shimabukuro, Katsuya| Tamakoshi, Masatada| Taoka, Azuma| Tashiro, Yosuke| Tulum, Isil| Wada, Hirofumi| Wakabayashi, Ken‐ichi|
Keywords appendage cytoskeleton flagella membrane remodeling Mollicutes motor protein peptidoglycan three domains
Published Date 2020-01-19
Publication Title Genes to Cells
Volume volume25
Issue issue1
Publisher Wiley
Start Page 6
End Page 21
ISSN 1356-9597
NCID AA11078945
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2020 The Authors.
File Version publisher
PubMed ID 31957229
DOI 10.1111/gtc.12737
Web of Science KeyUT 000507856400001
Related Url isVersionOf https://doi.org/10.1111/gtc.12737
FullText URL fulltext.pdf
Author Telengech, Paul| Hisano, Sakae| Mugambi, Cyrus| Hyodo, Kiwamu| Arjona-Lopez, Juan Manuel| Lopez-Herrera, Carlos Jose| Kanematsu, Satoko| Kondo, Hideki| Suzuki, Nobuhiro|
Keywords partitivirus dsRNA virus phytopathogenic fungus Rosellinia necatrix Cryphonectria parasitica diversity reassortment horizontal transfer
Published Date 2020-06-26
Publication Title Frontiers in Microbiology
Volume volume11
Publisher Frontiers Media
Start Page 1064
ISSN 1664-302X
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2020 Telengech et al.
File Version publisher
PubMed ID 32670213
DOI 10.3389/fmicb.2020.01064
Web of Science KeyUT 000551691300001
Related Url isVersionOf https://doi.org/10.3389/fmicb.2020.01064
FullText URL fulltext.pdf Tables.pdf Figures.pdf
Author Hirata, Seiji| Hayashi, Saori| Ohta, Masamitsu|
Keywords Three sections of wood Glossiness Color measurement L*a*b* color space L*C*h color space Density Average of annual ring width
Note This is a post-peer-review, pre-copyedit version of an article published in Journal of Wood Science. The final authenticated version is available online at: https://doi.org/10.1186/s10086-020-01883-2.|
Published Date 2020-05-19
Publication Title Journal of Wood Science
Volume volume66
Publisher Springer
ISSN 1435-0211
NCID AA11200007
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
File Version author
DOI 10.1186/s10086-020-01883-2
Web of Science KeyUT 000533783500001
Related Url isVersionOf https://doi.org/10.1186/s10086-020-01883-2
FullText URL CH38_1_14.pdf
Author Tanabe, Shintaro| Kasuya, Eiiti| Miyatake, Takahisa|
Keywords Habituation Hyla japonica individual variation sexual difference predation
Published Date 2019-02-28
Publication Title Current Herpetology
Volume volume38
Issue issue1
Publisher Herpetological Society of Japan
Start Page 14
End Page 22
ISSN 1345-5834
NCID AA12410796
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
File Version author
DOI 10.5358/hsj.38.14
Web of Science KeyUT 000483742900003
Related Url isVersionOf https://doi.org/10.5358/hsj.38.14
Title Alternative Sexuality in plants, unveiled from genome evolution
FullText URL srfa_109_037_040.pdf
Author Akagi, Takashi|
Abstract Sexual polymorphism, a main strategy to maintain genetic diversity within a species, has long been a major focus in biology. Notwithstanding, in plants, evolution of sexual systems and mechanisms underlying these transitions have been little unveiled. We have elucidated the molecular mechanism of sex determination in persimmons (Diospyros spp.), where the Y-encoded smRNA gene OGI can repress the female-determining gene MeGI, and also in kiwifruits (Actinidia spp.), where the Y-encoded two sex determinants, Shy Girl and Friendly Boy, control gynoecium and androecium development, respectively. Although the molecular functions of these determinants are distinct, they have common evolutionary scenarios involving transitions of sexual systems. In persimmon, a recent genome triplication (hexaploidization) in cultivated persimmon (D. kaki) derived “flexible” sexuality via establishing epigenetic layers on the two sex determinants. On the other hand, an ancient Diospyros-specific paleo-genome duplication (paleo-tetraploidization) enabled neofunctionalization in the proto-MeGI, via positive selection, to establish a new function as a sex determinant. In kiwifruit, one of the two sex determinants, Shy Girl, was derived from neofunctionalization via Actinidia-specific duplication event. These findings exemplify how plant-specific numerous duplication events can drive flexible genetic material whose variation can be selected for development of new sexual systems.
Keywords Sex determination Sex chromosome Polyploidization Genome evolution Tree crops
Publication Title Scientific Reports of the Faculty of Agriculture, Okayama University
Published Date 2020-02-01
Volume volume109
Start Page 37
End Page 40
ISSN 2186-7755
language Japanese
File Version publisher
FullText URL fulltext.pdf
Author Nakamura, Shunsuke| Yamada, Taihei| Nojima, Tsuyoshi| Naitou, Hiromichi| Koga, Hitoshi| Yamashita, Hisashi| Gochi, Akira| Nakao, Atsunori|
Keywords Acute care surgery Computed tomography Mesenteric hematoma
Published Date 2019-12-31
Publication Title International Journal of Surgery Case Reports
Volume volume65
Publisher Elsevier
Start Page 124
End Page 126
ISSN 22102612
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2019 The Author(s). Published by Elsevier Ltd on behalf of IJS Publishing Group Ltd.
File Version publisher
PubMed ID 31715445
DOI 10.1016/j.ijscr.2019.10.058
Web of Science KeyUT 000501862100027
Related Url isVersionOf https://doi.org/10.1016/j.ijscr.2019.10.058
Title Alternative Species identification of a laboratory strain belonging to the family Arvicolinae
FullText URL poalas_035_012_017.pdf
Author Takahata, Satoshi| Isemura, Natsumi| Mekada, Kazuyuki|
Abstract This study investigated the taxonomic status of a laboratory strain belonging to the family Arvicolinae for which the wild species name is unknown. This vole strain, though considered formerly a Lemming, was distinguishable from any Lemmus species by features of its appearance, skull and molar morphology, and conventional chromosomal pattern. Subsequently, we read the nucleotide sequence of the mitochondrial cytochrome b (Cyb) gene and constructed a molecular phylogenetic tree. We found that this vole strain belongs to the same clade as Microtus guenthe
Publication Title Proceedings of Okayama Association for Laboratory Animal Science
Published Date 2019-06
Volume volume35
Start Page 12
End Page 17
language Japanese
File Version publisher
FullText URL K0005983_abstract_review.pdf K0005983_summary.pdf
Author DINH TIEN TAI|
Published Date 2019-03-25
Content Type Thesis or Dissertation
Grant Number 甲第5983号
Granted Date 2019-03-25
Thesis Type Doctor of Philosophy
Grantor 岡山大学
language English
JaLCDOI 10.18926/AMO/55665
FullText URL 72_1_67.pdf
Author Watanabe, Akihisa| Ono, Qana| Nishigami, Tomohiko| Hirooka, Takahiko| Machida, Hirohisa|
Abstract It has been unclear whether the risk factors for rotator cuff tears are the same at all ages or differ between young and older populations. In this study, we examined the risk factors for rotator cuff tears using classification and regression tree analysis as methods of nonlinear regression analysis. There were 65 patients in the rotator cuff tears group and 45 patients in the intact rotator cuff group. Classification and regression tree analysis was performed to predict rotator cuff tears. The target factor was rotator cuff tears; explanatory variables were age, sex, trauma, and critical shoulder angle≥35°. In the results of classification and regression tree analysis, the tree was divided at age 64. For patients aged≥64, the tree was divided at trauma. For patients aged<64, the tree was divided at critical shoulder angle≥35°. The odds ratio for critical shoulder angle≥35° was significant for all ages (5.89), and for patients aged<64 (10.3) while trauma was only a significant factor for patients aged≥64 (5.13). Age, trauma, and critical shoulder angle≥35° were related to rotator cuff tears in this study. However, these risk factors showed different trends according to age group, not a linear relationship.
Keywords rotator cuff tears risk factor critical shoulder angle trauma classification and regression tree analysis
Amo Type Original Article
Publication Title Acta Medica Okayama
Published Date 2018-02
Volume volume72
Issue issue1
Publisher Okayama University Medical School
Start Page 67
End Page 72
ISSN 0386-300X
NCID AA00508441
Content Type Journal Article
language English
Copyright Holders CopyrightⒸ 2018 by Okayama University Medical School
File Version publisher
Refereed True
PubMed ID 29463941
Title Alternative Virus-induced gene silencing in Prunus fruit tree species with the Apple latent spherical virus vector
FullText URL srfa_107_011_017.pdf
Author Kawai, Takashi|
Abstract Virus-induced gene silencing (VIGS) has been used as a rapid and effective tool for functional analysis of genes in various plants, including woody fruit tree species. In this study, we attempted to develop a VIGS-based gene evaluation system for seven Prunus species, including apricot (P. armeniaca L.), sweet cherry (P. avium L.), almond [P. dulcis (Mill.) D. A. Webb.], peach (P. persica Batsch), Japanese apricot (P. mume Siebold & Zucc.), Japanese plum (P. salicina Lindl.), and European plum (P. domestica L.), with the Apple latent spherical virus (ALSV) vectors. ALSV vectors carrying part of the apricot PHYTOENE DESATURASE (PDS) gene sequence were amplified in Nicotiana benthamiana, and inoculated into the cotyledons of Prunus seedlings by particle bombardment. Typical PDS-silenced phenotypes, characterized by uniform discoloration of the upper leaves, were observed in sweet cherry and some cultivars of apricot and almond several weeks after inoculation. In contrast, attempted ALSV infections of Japanese apricot, Japanese plum, European plum, and the other cultivars of apricot and almond were unsuccessful. Furthermore, although the infection rate of ALSV in peach was high, severe viral infection symptoms were observed in the infected leaves. These results collectively suggested that the efficiency of ALSV infection and VIGS could vary depending on species and/or cultivar in Prunus. The possible use of the ALSV-mediated VIGS system for functional analysis of genes in Prunus is discussed.
Keywords gene evaluation system post-transcriptional gene silencing virus vector
Publication Title Scientific Reports of the Faculty of Agriculture, Okayama University
Published Date 2018-02-01
Volume volume107
Start Page 11
End Page 17
ISSN 2186-7755
language Japanese
File Version publisher