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ID 65242
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Author
Sato, Masanao Division of Applied Bioscience, Graduate School of Agriculture, Hokkaido University
Seki, Masahide Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo
Suzuki, Yutaka Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo
Ueki, Shoko Institute of Plant Science and Resources, Okayama University
Abstract
Heterosigma akashiwo is a eukaryotic, cosmopolitan, and uni-cellular alga (class: Raphidophyceae), and produces fish -killing blooms. There is a substantial scientific and practical interest in its ecophysiological characteristics that determine bloom dynamics and its adaptation to broad climate zones. A well-annotated genomic/genetic sequence information en-ables researchers to characterize organisms using modern molecular technology. In the present study, we conducted H. akashiwo RNA sequencing, a de novo transcriptome assem-bly of 84,693,530 high-quality deduplicated short-read se-quences.
Obtained RNA reads were assembled by Trinity assembler and 144,777 contigs were identified with N 50 values of 1085. Total 60,877 open reading frames with the length of 150 bp or greater were predicted. For further analy-ses, top Gene Ontology terms, pfam hits, and blast hits were annotated for all the predicted genes. The raw data were deposited in the NCBI SRA database (BioProject PR - JDB6241 and PRJDB15108), and the assemblies are available in NCBI TSA database (ICRV01). The annotation information can be obtained in Dryad and can be accessed via doi: 10.5061/dryad.m0cfxpp56.
Keywords
Harmful alga
Nuclear gene
Gene prediction
Gene ontology
Stramenopile
Heterokont
Published Date
2023-06
Publication Title
Data in Brief
Volume
volume48
Publisher
Elsevier
Start Page
109071
ISSN
2352-3409
Content Type
Journal Article
language
English
OAI-PMH Set
岡山大学
Copyright Holders
© 2023 The Author(s).
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DOI
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Related Url
isVersionOf https://doi.org/10.1016/j.dib.2023.109071
License
http://creativecommons.org/licenses/by/4.0/
Funder Name
Japan Society for the Promotion of Science
助成番号
16H06449
221S0002