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  3. Sudo, Yuki

Sudo, Yuki

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A repertoire of visible light–sensitive opsins in the deep-sea hydrothermal vent shrimp Rimicaris hybisae
FullText URL fulltext.pdf suppl.docx
Author Nagata, Yuya| Miyamoto, Norio| Sato, Keita| Nishimura, Yosuke| Tanioka, Yuki| Yamanaka, Yuji| Yoshizawa, Susumu| Takahashi, Kuto| Obayashi, Kohei| Tsukamoto, Hisao| Takai, Ken| Ohuchi, Hideyo| Yamashita, Takahiro| Sudo, Yuki| Kojima, Keiichi|
Keywords rhodopsin opsin G protein–coupled receptor signal transduction photoreceptor vision photobiology vent shrimp deep sea molecular evolution
Published Date 2025-07
Publication Title Journal of Biological Chemistry
Volume volume301
Issue issue7
Publisher Elsevier BV
Start Page 110291
ISSN 0021-9258
NCID AA00251083
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2025 The Authors.
File Version publisher
PubMed ID 40436317
DOI 10.1016/j.jbc.2025.110291
Related Url isVersionOf https://doi.org/10.1016/j.jbc.2025.110291
Roles of basic amino acid residues in substrate binding and transport of the light-driven anion pump Synechocystis halorhodopsin (SyHR)
FullText URL fulltext.pdf
Author Nakama, Masaki| Noji, Tomoyasu| Kojima, Keiichi| Yoshizawa, Susumu| Ishikita, Hiroshi| Sudo, Yuki|
Keywords microbial rhodopsin anion transport retinal membrane protein photobiology
Published Date 2025-04
Publication Title Journal of Biological Chemistry
Volume volume301
Issue issue4
Publisher Elsevier
Start Page 108334
ISSN 1083-351X
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2025 The Authors.
File Version publisher
PubMed ID 39984052
DOI 10.1016/j.jbc.2025.108334
Web of Science KeyUT 001450594900001
Related Url isVersionOf https://doi.org/10.1016/j.jbc.2025.108334
Bidirectional Optical Control of Proton Motive Force in Escherichia coli Using Microbial Rhodopsins
Author Nakanishi, Kotaro| Kojima, Keiichi| Sowa, Yoshiyuki| Sudo, Yuki|
Note This document is the Accepted Manuscript version of a Published Work that appeared in final form in Journal of Physical Chemistry B, copyright © 2024 American Chemical Society after peer review and technical editing by the publisher. To access the final edited and published work see https://doi.org/10.1021/acs.jpcb.4c03027.| This fulltext file will be available in Aug. 2025.|
Published Date 2024-07-01
Publication Title The Journal of Physical Chemistry B
Volume volume128
Issue issue27
Publisher American Chemical Society (ACS)
Start Page 6509
End Page 6517
ISSN 1520-6106
NCID AA11114073
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2024 American Chemical Society
File Version author
PubMed ID 38949422
DOI 10.1021/acs.jpcb.4c03027
Web of Science KeyUT 001261316100001
Related Url isVersionOf https://doi.org/10.1021/acs.jpcb.4c03027
Large-volume focus control at 10 MHz refresh rate via fast line-scanning amplitude-encoded scattering-assisted holography
FullText URL fulltext.pdf
Author Shibukawa, Atsushi| Higuchi, Ryota| Song, Gookho| Mikami, Hideharu| Sudo, Yuki| Jang, Mooseok|
Note The version of record of this article, first published in Nature Communications, is available online at Publisher’s website: http://dx.doi.org/10.1038/s41467-024-47009-w|
Published Date 2024-04-08
Publication Title Nature Communications
Volume volume15
Issue issue1
Publisher Nature Portfolio
Start Page 2926
ISSN 2041-1723
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © The Author(s) 2024
File Version publisher
PubMed ID 38589389
DOI 10.1038/s41467-024-47009-w
Web of Science KeyUT 001198902100006
Related Url isVersionOf https://doi.org/10.1038/s41467-024-47009-w
Identification of a Functionally Efficient and Thermally Stable Outward Sodium-Pumping Rhodopsin (BeNaR) from a Thermophilic Bacterium
FullText URL fulltext20231011-03.pdf
Author Kurihara, Marie| Thiel, Vera| Takahashi, Hirona| Kojima, Keiichi| Ward, David M.| Bryant, Donald A.| Sakai, Makoto| Yoshizawa, Susumu| Sudo, Yuki|
Keywords rhodopsin ion transport retinal isomerization optogenetics
Published Date 2023-02-01
Publication Title Chemical and Pharmaceutical Bulletin
Volume volume71
Issue issue2
Publisher Pharmaceutical Society of Japan
Start Page 154
End Page 164
ISSN 0009-2363
NCID AA00602100
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2023 The Pharmaceutical Society of Japan
File Version publisher
PubMed ID 36724978
DOI 10.1248/cpb.c22-00774
Web of Science KeyUT 000964953300013
Related Url isVersionOf https://doi.org/10.1248/cpb.c22-00774
Expression of microbial rhodopsins in Escherichia coli and their extraction and purification using styrene-maleic acid copolymers
FullText URL fulltext.pdf
Author Kojima, Keiichi| Sudo, Yuki|
Published Date 2022-03-18
Publication Title STAR Protocols
Volume volume3
Issue issue1
Publisher Cell Press
Start Page 101046
ISSN 2666-1667
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2021
File Version publisher
PubMed ID 34984357
DOI 10.1016/j.xpro.2021.101046
Web of Science KeyUT 001055085700004
Related Url isVersionOf https://doi.org/10.1016/j.xpro.2021.101046
Demonstration of iodide-dependent UVA-triggered growth inhibition in Saccharomyces cerevisiae cells and identification of its suppressive molecules
FullText URL fulltext20230828-02.pdf
Author Ono, Ryota| Saeki, Nozomu| Kojima, Keiichi| Moriya, Hisao| Sudo, Yuki|
Keywords UVA Saccharomyces cerevisiae Iodide Growth inhibition Suppressive molecule
Note © 2023 Elsevier Inc. This manuscript version is made available under the CC-BY-NC-ND 4.0 license https://creativecommons.org/licenses/by-nc-nd/4.0/| This fulltext file will be available in Oct. 2024.|
Published Date 2023-10-15
Publication Title Biochemical and Biophysical Research Communications
Volume volume677
Publisher Elsevier BV
Start Page 1
End Page 5
ISSN 0006-291X
NCID AA00564395
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2023 Elsevier Inc.
File Version author
PubMed ID 37523893
DOI 10.1016/j.bbrc.2023.07.048
Web of Science KeyUT 001047346900001
Related Url isVersionOf https://doi.org/10.1016/j.bbrc.2023.07.048
Structure and mechanism of oxalate transporter OxlT in an oxalate-degrading bacterium in the gut microbiota
FullText URL fulltext.pdf
Author Jaunet-Lahary, Titouan| Shimamura, Tatsuro| Hayashi, Masahiro| Nomura, Norimichi| Hirasawa, Kouta| Shimizu, Tetsuya| Yamashita, Masao| Tsutsumi, Naotaka| Suehiro, Yuta| Kojima, Keiichi| Sudo, Yuki| Tamura, Takashi| Iwanari, Hiroko| Hamakubo, Takao| Iwata, So| Okazaki, Kei-Ichi| Hirai, Teruhisa| Yamashita, Atsuko|
Note The version of record of this article, first published in Nature Communications, is available online at Publisher’s website: http://dx.doi.org/10.1038/s41467-023-36883-5|
Published Date 2023-04-03
Publication Title Nature Communications
Volume volume14
Issue issue1
Publisher Nature Portfolio
Start Page 1730
ISSN 2041-1723
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © The Author(s) 2023
File Version publisher
PubMed ID 37012268
DOI 10.1038/s41467-023-36883-5
Web of Science KeyUT 001002031500007
Related Url isVersionOf https://doi.org/10.1038/s41467-023-36883-5
A blue-shifted anion channelrhodopsin from the Colpodellida alga Vitrella brassicaformis
FullText URL fulltext.pdf
Author Kojima, Keiichi| Kawanishi, Shiho| Nishimura, Yosuke| Hasegawa, Masumi| Nakao, Shin| Nagata, Yuya| Yoshizawa, Susumu| Sudo, Yuki|
Note The version of record of this article, first published in Scientific Reports, is available online at Publisher’s website: http://dx.doi.org/10.1038/s41598-023-34125-8|
Published Date 2023-04-28
Publication Title Scientific Reports
Volume volume13
Issue issue1
Publisher nature portfolio
Start Page 6974
ISSN 2045-2322
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © The Author(s) 2023
File Version publisher
PubMed ID 37117398
DOI 10.1038/s41598-023-34125-8
Web of Science KeyUT 000985908500047
Related Url isVersionOf https://doi.org/10.1038/s41598-023-34125-8
Development of light-induced disruptive liposomes (LiDL) as a photoswitchable carrier for intracellular substance delivery
FullText URL fulltext20230619-04.pdf
Author Tsuneishi, Taichi| Kojima, Keiichi| Kubota, Fumika| Harashima, Hideyoshi| Yamada, Yuma| Sudo, Yuki|
Published Date 2023
Publication Title Chemical Communications
Volume volume59
Issue issue49
Publisher Royal Society of Chemistry (RSC)
Start Page 7591
End Page 7594
ISSN 1359-7345
NCID AA11071130
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © The Royal Society of Chemistry 2023
File Version publisher
PubMed ID 37254694
DOI 10.1039/d3cc02056h
Web of Science KeyUT 000999015900001
Related Url isVersionOf https://doi.org/10.1039/D3CC02056H
Correction: Convergent evolution of animal and microbial rhodopsins
FullText URL fulltext.pdf
Author Kojima, Keiichi| Sudo, Yuki|
Published Date 2023-03-06
Publication Title RSC Advances
Volume volume13
Issue issue11
Publisher Royal Society of Chemistry
Start Page 7222
End Page 7224
ISSN 2046-2069
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2023 The Author(s).
File Version publisher
PubMed ID 36891494
DOI 10.1039/d3ra90016a
Web of Science KeyUT 000943987600001
Related Url isVersionOf https://doi.org/10.1039/d3ra90016a
Convergent evolution of animal and microbial rhodopsins
FullText URL fulltext.pdf
Author Kojima, Keiichi| Sudo, Yuki|
Published Date 2023-02-13
Publication Title RSC Advances
Volume volume13
Issue issue8
Publisher ROYAL SOC CHEMISTRY
Start Page 5367
End Page 5381
ISSN 2046-2069
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2023 The Author(s).
File Version publisher
PubMed ID 36793294
DOI 10.1039/d2ra07073a
Web of Science KeyUT 000929858500001
Related Url isVersionOf https://doi.org/10.1039/d2ra07073a
Detection of Membrane Potential-Dependent Rhodopsin Fluorescence Using Low-Intensity Light Emitting Diode for Long-Term Imaging
FullText URL fulltext.pdf
Author Kawanishi, Shiho| Kojima, Keiichi| Shibukawa, Atsushi| Sakamoto, Masayuki| Sudo, Yuki|
Published Date 2023-01-25
Publication Title ACS Omega
Volume volume8
Publisher American Chemical Society
Start Page 4826
End Page 4834
ISSN 2470-1343
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2023 The Authors.
File Version publisher
PubMed ID 36777568
DOI 10.1021/acsomega.2c06980
Web of Science KeyUT 000926216100001
Related Url isVersionOf https://doi.org/10.1021/acsomega.2c06980
Exploring the Retinal Binding Cavity of Archaerhodopsin-3 by Replacing the Retinal Chromophore With a Dimethyl Phenylated Derivative
FullText URL fulltext.pdf
Author Tsuneishi, Taichi| Takahashi, Masataka| Tsujimura, Masaki| Kojima, Keiichi| Ishikita, Hiroshi| Takeuchi, Yasuo| Sudo, Yuki|
Keywords retinal rhodopsin proton pump derivative photoreceptor
Published Date 2021-12-20
Publication Title Frontiers In Molecular Biosciences
Volume volume8
Publisher Frontiers Media SA
Start Page 794948
ISSN 2296-889X
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2021 Tsuneishi, Takahashi, Tsujimura, Kojima, Ishikita, Takeuchi and Sudo.
File Version publisher
PubMed ID 34988122
DOI 10.3389/fmolb.2021.794948
Web of Science KeyUT 000738864800001
Related Url isVersionOf https://doi.org/10.3389/fmolb.2021.794948
Proton transfer pathway in anion channelrhodopsin-1
FullText URL fulltext.pdf
Author Tsujimura, Masaki| Kojima, Keiichi| Kawanishi, Shiho| Sudo, Yuki| Ishikita, Hiroshi|
Published Date 2021-12-21
Publication Title Elife
Volume volume10
Publisher eLIFE SCIENCES PUBL LTD
Start Page e72264
ISSN 2050-084X
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © Tsujimura et al.
File Version publisher
PubMed ID 34930528
DOI 10.7554/eLife.72264
Web of Science KeyUT 000733603500001
Related Url isVersionOf https://doi.org/10.7554/eLife.72264
Microbial Rhodopsins as Multi-functional Photoreactive Membrane Proteins for Optogenetics
FullText URL fulltext20211109-3.pdf
Author Nakao, Shin| Kojima, Keiichi| Sudo, Yuki|
Keywords rhodopsin optogenetics retinal signal transduction
Published Date 2021-10-1
Publication Title Biological and Pharmaceutical Bulletin
Volume volume44
Issue issue10
Publisher Pharmaceutical Society of Japan
Start Page 1357
End Page 1363
ISSN 0918-6158
NCID AA10885497
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © 2021 The Pharmaceutical Society of Japan
File Version publisher
PubMed ID 34602542
DOI 10.1248/bpb.b21-00544
Web of Science KeyUT 000703500200002
Related Url isVersionOf https://doi.org/10.1248/bpb.b21-00544
Functional expression of the eukaryotic proton pump rhodopsin OmR2 in Escherichia coli and its photochemical characterization
FullText URL fulltext.pdf
Author Kikuchi, Masuzu| Kojima, Keiichi| Nakao, Shin| Yoshizawa, Susumu| Kawanishi, Shiho| Shibukawa, Atsushi| Kikukawa, Takashi| Sudo, Yuki|
Published Date 2021-07-20
Publication Title Scientific Reports
Volume volume11
Issue issue1
Publisher Nature Portfolio
Start Page 14765
ISSN 2045-2322
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © The Author(s) 2021
File Version publisher
PubMed ID 34285294
DOI 10.1038/s41598-021-94181-w
Web of Science KeyUT 000692201200025
Related Url isVersionOf https://doi.org/10.1038/s41598-021-94181-w
Lokiarchaeota archaeon schizorhodopsin-2 (LaSzR2) is an inward proton pump displaying a characteristic feature of acid-induced spectral blue-shift
FullText URL fulltext.pdf
Author Kojima, Keiichi| Yoshizawa, Susumu| Hasegawa, Masumi| Nakama, Masaki| Kurihara, Marie| Kikukawa, Takashi| Sudo, Yuki|
Published Date 2020-11-30
Publication Title Scientific Reports
Volume volume10
Issue issue1
Publisher Nature Research
Start Page 20857
ISSN 2045-2322
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © The Author(s) 2020
File Version publisher
PubMed ID 33257762
DOI 10.1038/s41598-020-77936-9
Web of Science KeyUT 000609202800018
Related Url isVersionOf https://doi.org/10.1038/s41598-020-77936-9
Vectorial Proton Transport Mechanism of RxR, a Phylogenetically Distinct and Thermally Stable Microbial Rhodopsin
FullText URL fulltext.pdf
Author Kojima, Keiichi| Ueta, Tetsuya| Noji, Tomoyasu| Saito, Keisuke| Kanehara, Kanae| Yoshizawa, Susumu| Ishikita, Hiroshi| Sudo, Yuki|
Keywords Biochemistry Biophysics
Published Date 2020-01-14
Publication Title Scientific Reports
Volume volume10
Issue issue1
Publisher Nature
Start Page 282
ISSN 2045-2322
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
Copyright Holders © The Author(s) 2020
File Version publisher
PubMed ID 31937866
DOI 10.1038/s41598-019-57122-2
Web of Science KeyUT 000562803500001
Related Url isVersionOf https://doi.org/10.1038/s41598-019-57122-2
The Unlimited Potential of Microbial Rhodopsins as Optical Tools
FullText URL fulltext.pdf
Author Kojima, Keiichi| Shibukawa, Atsushi| Sudo, Yuki|
Published Date 2019-12-09
Publication Title Biochemistry
Volume volume59
Issue issue3
Publisher American Chemical Society
Start Page 218
End Page 229
ISSN 0006-2960
NCID AA00564599
Content Type Journal Article
language English
OAI-PMH Set 岡山大学
File Version author
PubMed ID 31815443
DOI 10.1021/acs.biochem.9b00768
Web of Science KeyUT 000510530400003
Related Url isVersionOf https://doi.org/10.1021/acs.biochem.9b00768
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